Platform

Capabilities

What each part of Livemore Bio does in release stable 6588707. For what is not built yet, see the evidence model and the roadmap.

Individualized twins and cohorts

  • Admit a consented real-human profile with field-level EHR, laboratory, device, medication, genomic, lifestyle and environmental provenance. Missing domains stay missing.
  • Or create a non-person research twin on the server from a pinned public-population manifest (NHANES 2021–2023 and published Diabetes Prevention Program baseline anchors).
  • Frozen cohorts record their synthetic member profiles, seeds, source lineage and fingerprints. Synthetic and real-human members are never mixed.
  • Exactly one twin is authoritative across Atlas, LIFE Patch, Cendos, the terminal and notebooks.

Executable physiology

  • Glucose–insulin dynamics: reduced Bergman ODEs solved with SciPy/LSODA.
  • Exogenous insulin: the published Hovorka model, with source lineage for every parameter.
  • Ventricular electrophysiology: O'Hara–Rudy CiPA 2017 (49 states), run natively through Myokit/CVODE from CellML. It models the hERG/IKr block to APD prolongation mechanism.
  • Cross-scale coupling rules between metabolic and cardiac state. Their magnitude has no admitted source yet, and they are labelled as hypotheses.

Cendos in-silico lab

  • Six reference programs: exogenous insulin plus five botanical compounds. See reference programs.
  • Human-GEM 2.0 constraint-based metabolism in an isolated COBRApy/GLPK worker, with GPR-aware gene knockouts and negative controls.
  • Protocols for metformin across two cohorts, garcinoic acid and human PXR, and a lobeline/VMAT2 initial-rate assay.
  • Every run made through the services is immutable. It can be reopened, re-run with a parent link, and exported as CSV and an executable Jupyter notebook.

LIFE measurement plane

  • LIFE Patch v2 contract: manifest, telemetry, quality, commands and receipts, shared by the physical and virtual device.
  • The virtual LIFE Patch binds to a twin and streams modeled channels. Unmodeled channels show UNAVAILABLE.
  • Admission rejects invalid or replayed data and writes an encrypted journal. Telemetry updates observed state only and never silently recalibrates the model.
  • The B0 hardware target (MAX30003 ECG, MAX86141 optical, AD5940 electrochemistry, DS28C36 pod authentication) is specified, not manufactured.

Evidence and provenance

  • evidence_state and qualification_state on every result, plus applicability and interpretation_limits where the protocol defines them.
  • claims_allowed and claims_prohibited state what a result can and cannot support.
  • Controls run on every execution. For example, a zero-dose arm must reproduce the untreated arm exactly.
  • Pinned model commits and SHA-256 digests, solver versions, and literature lineage for each parameter.

See the evidence model for every field.

Governed knowledge and sources

  • A whole-human manifest with an eight-step maturity ladder for each body system. See whole-human coverage.
  • A scientific-source catalog of 2,647 entries: all 39 ELIXIR Core Data Resources, 2,594 NAR database summaries and 14 Livemore adapters. Each entry moves through a lifecycle from cataloged to scientifically_qualified. Catalog entries are never queried by experiments until they are wired and qualified.
  • Adapter readiness, license links and credential gates. Commercially restricted sources (for example KEGG, GeneCards, Recon3D) fail closed without entitlement.
  • A knowledge graph (Gene, Disease, Pathway, Organ and Drug) and a TF-IDF retrieval index.

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